NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0003657

Scaffold Ga0334987_0003657


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0003657 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14654
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (82.61%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007222Metagenome / Metatranscriptome355Y
F015073Metagenome / Metatranscriptome257Y
F055557Metagenome / Metatranscriptome138N
F085385Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0003657_1630_2142F055557N/AMQMKMKIAHDEEWMAAKVAIERVEEIEGKPDHVSRYNKNLSFHDYICEIAESVGAEIAVAKYFGIKDFNPRASRFKRTADVGSIIEVKWTKYDAGSLIIYDGDRNTDIAILVTGKSPNYVLKGWIPVAIAKNQKWRRRDQPTYWVEQYNLHPIENLRRSSHGEATLPMSG
Ga0334987_0003657_2333_2947F015073GAGVGFLDGYETVNQKVIRLHATYPTNRIETSIVDWQPEKGYILIECRIYRNYEDEKPSAIDYAHGMVGAYNVQMKRWYVEDTVSSAIGRCASVVLGTETKPSLESMEQVETMPKAFVEDDPWSKPFGEDGFSTAKSAMDEIQTKLGGELVAEAPICAHGHMILKEGVSPKTSKPYRGHVCTEKVKANQCSPIWYEVNSTGGWKARS
Ga0334987_0003657_2947_3096F085385GGAGMYALQEVAAWMLFGVLAGFTGGYTLGLKEGKREGFIRGRIAGRKNAEIR
Ga0334987_0003657_8047_8586F007222GGAGMASKAKQGRFEITVDPVEFRNLIGLLNALDKDSQDEIRSKALPLSKRLAGQLLMFSQSAPSPQTKLVAESIVAKRDRLIRVDVGGTKKVGRKYGGEQSKSGKGKKVRQQSAPAGALLWGTEYGSGRGVDFLGRAYTDRFKAARNKRGYWMTPAVDYYTPIVAREYAQMVQDVVKKLGLD
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