NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0004417

Scaffold Ga0334987_0004417


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0004417 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13443
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (71.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004050Metagenome / Metatranscriptome455Y
F007223Metagenome355Y
F012648Metagenome / Metatranscriptome278Y
F013758Metagenome268Y
F061604Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0004417_2159_2377F004050GAGMAKKKVIDLDTYSRLDAWAISLHEMYRALRRAGFAVDLALSIIQDRDAYPDWILPSIPDRVDRLPYEDDDED
Ga0334987_0004417_4273_5523F013758AGGAMTAYTPDFKVLINGVELTDVTVADFVITSGRTDIYQQPVAGYCQLQLLNLDNSAYDFNVGSGLAVEVTNSVGTYIPIFGGLISDFTITVNSTGQLGYTTVASITALGALSKLPKNITEGILSQDFDGDQIYALLSDFLLGRWNELSPTQTWAAYPSTQTWANAANFGLGEIDQPGVYELISRSASDTDLYSLCSAIATSSLGVLYEDGSGNISYADATHRQNYLANNGYTTLDANHANGVGLAISSRTGDIRNSFTIAYDNNANQSYTAFDLESQALYGLYAESYTSRIKKTDDAEDLADRYIALRANPSAKFQNITFVLGNPEIDDSDRDALINVFLGQPVWVQNLPPNISDGQFQGFIEGWTFRASLNNLTVTFNASPINFSQIAVKWEQVDPAEQWNTLNTSLTWLTAIGAVA
Ga0334987_0004417_609_776F061604N/AMLEIPISDYQACLAMVEVKLARLQETPNHIDSYIDAVAYLSLACELSTEEDEQYV
Ga0334987_0004417_7406_7672F012648GGAGMQQNITIKYNDGTETTYQVRPPDYARWELTTKKVIAQFGGMWDILYVAHSAMKRDAGGKPTKPLDVWMESIADVEVGDESPKVIQEEA
Ga0334987_0004417_884_1039F007223AGGMFDPSLGDFIVMIVMAALYFHVGRMVGIRVGYLQGRKAVRDYYESKEKVRV
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