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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034061 Open in IMG/M |
| Scaffold ID | Ga0334987_0005449 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12141 |
| Total Scaffold Genes | 27 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (81.48%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000468 | Metagenome | 1102 | Y |
| F001834 | Metagenome / Metatranscriptome | 628 | Y |
| F002357 | Metagenome / Metatranscriptome | 567 | Y |
| F007469 | Metagenome / Metatranscriptome | 350 | Y |
| F028151 | Metagenome | 192 | Y |
| F037698 | Metagenome / Metatranscriptome | 167 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334987_0005449_10062_10448 | F001834 | N/A | MPSTILSDIRTPLATALAGVAGNVYSFVPETVIPPAVVVVPDSPYLELETINKSTIHTKINFTISIAVAYNSNPASLDNIEQLIMSVLAVIPTGYVVSSVERPTVTQVGASTLLIADVRVSTYYTQTA |
| Ga0334987_0005449_1212_1412 | F007469 | AGGAGG | MGELQIIDGSGLTATFTNDGIKVEPSTTYCDMCNDDRLLHEGDLLRCYNCHAINRIPYPVHKEPNA |
| Ga0334987_0005449_1413_2075 | F002357 | AGGAG | MAFNLEDYEDVATLNKWFIANYPMGRSDLSVISHDPEKGYILIQSTLWRDSKDAAPAVSNVAFGSRETYIPNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMRKVETNPSFKEKLEARQNMYGKPGSKSAQIETILRDSFEADKKPEPVAWSVGEVVSEIGASIPNEPPACQHGHILKEGISKGGKPYYGYVCKAKQCDAKWAKLTANGKWYFEGGE |
| Ga0334987_0005449_2361_2573 | F028151 | GGCGG | MNAWLEARDMGFVIMWTIVGLTFAAWIIYEIRDTAFQNGYWKGRADGWNMHRRMTNIKAQSDEVFDYDKN |
| Ga0334987_0005449_6357_7604 | F000468 | GAGG | MTVWTPDWKLTVEGVDYTDIAIADIAHQAGRDDIYAQPNPSYLQVQIVALSGQTLPFAINNGMTLQVKDSTGTYQTLFGGNITDVTVEVSSTSSIATVISYTILAMGALVKLAKEVYDSTLSQDFDGNQMLTLLSYSLTNSWTEVSAAQTWATYDATITWANAENIGLGEVDTPGLYEMENRGNQPDTIYNIASAIANSAFGYLYEDAQGNIGYADADHRQTYLATYGYTELSANTAIGAGLRTTTKAADIRNDIYINYGNNFGSQKTATDTTSIATYGYRSETINSLIHDADNAQEVADRYISQRAFPFPTFDSITFPITNPELDDNDRDALLSIFVGQPIHITDLPSQISNGAFEGYVEGWRWSTRFNELFLTINLSPVSFSQVAMRWNTVPATEAWNMIDNTLTWENATIVA |
| Ga0334987_0005449_725_844 | F037698 | AGGAG | MCDSHDQGEHEIDWAYQNKLHKQWLADNPDAGYIGWMSI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |