NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0026518

Scaffold Ga0334987_0026518


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0026518 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5124
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013988Metagenome266Y
F047052Metagenome150N

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0026518_1152_1778F013988AGGMAAYTVTHKQLTDNYAVLQLLTEAEIEVGASVVITGVDATFNGTYIVYALPQYAFMGVDDEGDLLFDPAVTIPNQVLYAKTASDVARTAASGTLTITQTCTWVTSAMLEDWLGIGTATAADAAFLTICASACSQFAWRRRMEAGYVDSLTTVPSQDVLLGTQMYGGSLYRQRGSIDQFASFQNMGVTPVMGLNGMIRQLLGIDRPQVA
Ga0334987_0026518_3_272F047052AGGAMKIKLTLTRGDKKETLITNLFAISEWERLENRRVSDGRGIGASDMACWAYIMLGIKGETLPATWREWLKANPDVEIGVEDATDVNPTDAA
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