NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0067941

Scaffold Ga0334987_0067941


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0067941 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2863
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014956Metagenome / Metatranscriptome258Y
F021732Metagenome / Metatranscriptome217Y
F031483Metagenome182N
F052398Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0067941_1152_1406F021732N/AMSITKYTVKCCLDKKLGHFVHVIFSSGFGLYGGNKPHHEDDNIEIHGWTFEPHHIDLSLYPVINYRNLMPLVDENEMDWVIIKN
Ga0334987_0067941_1767_2024F014956N/AMNIQDFVINVTTTVCPSHIVEPDHLKKWWRQRGVGELEKYFVSGNAIHYNEEIDWKKISDHKKSLWYDSQNFQINMGHEYSKRQG
Ga0334987_0067941_1999_2457F031483N/AMNILKGRVKYTAGKVFEGQYGLSINAAITLENGTDIRVYGKPDDEKLKALQKDDIVTIIHDGKSYKVAFDMVTANDLPEKVQTPTEGNNVQQAANVVPKTNGKLTAEEISEKATFMTGIYADIFHQLQASGLEPAQAQPAAATIFIQIGKFF
Ga0334987_0067941_2_679F052398N/AVIDNRDKRLFKTGIVESLPKINQVVKQILPLYGIDASPEHLVEVTQFITTYKLIAVDEIKLAFEKFARQELNIDDHKLYGKVDLAAIGRILTAYINWRQKVYFTVDMEDEKKRAKMEEEQRQVEAKKKFYAEFPEMLSGFKGESYEDVPVYWYDAAMEAGLIGYAEGEKRAIWEEAQDIASKQKIQADSYIDFKTQLHRVEEEGKKRAIIIAQKLAVWRIVLNKT

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