NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0077232

Scaffold Ga0334987_0077232


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0077232 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2639
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020909Metagenome221Y
F024097Metagenome / Metatranscriptome207N
F089589Metagenome109Y
F096878Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0077232_1190_1549F096878GAGVGVLINRDPLFSVHNALNGDVVIYLEERDANCDLVEDVLTQVPMESLKAINSLRHIDLKSIESARLMDKARSAVPDLAIQLASVSESEALTLADQLITAVKFARAMRSQPAATKLELVK
Ga0334987_0077232_1551_1901F024097GGAGLANPNGRKGALFETSVMKWLRERGVSAERLTKAGSKDEGDIVCVVANKTYIFELKNRKAITLPAFWDEAITEANNYAVARNLEQTPPAYVIIKRRNTGIEKSWVVQDLEQWLETRE
Ga0334987_0077232_508_747F089589GGTGGMSNRLWVDDDGTVLCDEHAGMYLICAIKAKPQAIQHKTPLGTWCAYYTNLLGGKDLVCETCVPWNSPNHPYNQMNAGAE
Ga0334987_0077232_94_258F020909GGAGMITKRGKKVRAIAIAIGIIVIWQVATNLWWVGIDAPNAEFLGWCWGSMSECVVL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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