NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0113188

Scaffold Ga0334987_0113188


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0113188 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2059
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003786Metagenome / Metatranscriptome468N
F038230Metagenome166N
F041020Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0113188_1261_1851F003786N/AMYGIDGDLAFFANIAKEIVKTFGQIAANEIEIAFRLFSAESLELDDDVKFYGKANMHTIGKILNGYMTYRRRIIASHDNEVAALRHQVQMEERGKAEREKLYAEFPTMIKEFTGKTFEDVPLYWYDMCLKFDMITYEEGEKRALWDEAQAIALKEPPESLDLLTIRSHAKKIEQGNMKRAVVIAQKLAVWRKVIKK
Ga0334987_0113188_692_931F041020N/AMKQTPKEKAKILYDHYHVLITAIGGELGNEILVTILAEQCALFFAMQMQQEKWDIKKYNAYEYWHEVEVEIVNIGMYAM
Ga0334987_0113188_921_1130F038230GGAMQCKQDRNAYMREYMKKYRATMNEYTYKKIRERENQRLRAKYHAMSKEERQRYIEYQRTYHKLKQFIND
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