NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0008335

Scaffold Ga0334995_0008335


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0008335 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9933
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005344Metagenome403Y
F032154Metagenome180Y
F047498Metagenome149N

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0008335_4855_5346F047498N/AMIKMKITAADEWAIHNRAAQVVFSLDELGTVQRYNNKLNNHERVTEYAESLGAEMVVARYFGLDFDINVSNGKRNADVGKGIEVKWTSYINGSLIIYPNDRVDDVAVLVVGRSPEYFIAGWLPVKMAMQKHFKNSQQESWWIGQDNLNPIEDLVRSSYAATHI
Ga0334995_0008335_5343_5537F032154AGGMGDFEMIDLRTGDRLRIDKDGTELRDEIDPPSIEWCDTGQHYASKLGGREQGGILWICLMCQKK
Ga0334995_0008335_9295_9933F005344N/AIYEDANGQIGYADSTHRTTYLAANGYTDLTANHALGRGITIKTRAGDVRNDVTIKYGIDSGSQVSDRDEASIGLYGELAQIISTTIKHQADAEDQAAFYLALRAYPQPNFDQITYALTNPELDNGDRDSLINVFMGQPIALNNLPVNMSAGTFQGFVEGFTFRASYNELSVTLLMSPAGYSLQAMRWNDVPITETWASVSPTLTWEYATIVS
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