NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0009888

Scaffold Ga0334995_0009888


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0009888 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9017
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (46.15%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045693Metagenome / Metatranscriptome152Y
F074772Metagenome / Metatranscriptome119Y
F095349Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0009888_2752_3978F095349N/AMSAQTATTCEAISDQFQRETGRIALGTHRLGLYKDPYMRFVTQSAFPDNMGAVITNTIAQRTVAVGSGWEDVGVTGVDGEANSCLAPVKTVGYAFDQKTFKLRHQAIESNWICLEDVRTSAFPIDDVNNYIKILADNVNKEWVERYDNDYYAAVTKVSVEPGLAESTGSTFGSLPNPTSVLTVGVLRELYDRLYQNNAGDDGDAVTDDGSPVFNVFAERATIENLIKLNEDVRQDIRWSDRVNDLLGANGSSLLPRKAYGGFVFHSRPFPKRFNDNGTGGYTEVAPYVSTTGATKGTKFIINPAYKAAKYTSTVVFHPKAVEWLVPNPNLKVGKLVYDAQNYRGDFRWINEFDRNCNPDKNSGYWRAKMACAAKQVFPEFGYYILHLRCNLAADLVACPSGSGYGYLA
Ga0334995_0009888_479_811F045693GGAMKDKLLAFLVSKMGGIITPLIAMVVAAIVSRLAMVDPKLAESVDQVSLTGFIVALLISVVNYVTNEVNVRGVKKIQALVNTDEDGVAGPITYTEVRRAIAIKKPVRRKKK
Ga0334995_0009888_5526_5813F074772AGGAMDWTDQDAREWAKTWAMPHMQKGLKFISKRIRPKRSSSPVAQGFDLSPVFIKSAGFYEGSQEVMDLIDTLGQGQVNKPKFDLPEPFSHITSEETN

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