NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0014648

Scaffold Ga0334995_0014648


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0014648 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7191
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002398Metagenome / Metatranscriptome563Y
F002406Metagenome562Y
F006182Metagenome379Y
F009266Metagenome / Metatranscriptome320Y
F066782Metagenome126N
F105155Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0014648_1756_2106F066782GGAMNEENLKKLGYYNIALEMLLKREAQINTDGLEILDRVPILNKDPSLNDLSSDVKSDVRNILNKLEEVKELLNNLPEYTVAEEEYDEDVRSFPMHKRYAKDELENLIEEIKQLQRYA
Ga0334995_0014648_4604_4843F006182GAGMKINFNVTGTMEIPDDAIKHYDAAGKLYALEFNDIMYMLQVCIVAEAGAGGWEILHQYEEMQNHSITNVRYKDAEFSED
Ga0334995_0014648_4833_5054F105155AGGAVKISAAKKLAAEIKYLEWDLVSFNFYHKTYKGYNFYKRNISLNYWQYTVTNDITHCTFKVYEKEANNAKLGNE
Ga0334995_0014648_5949_6143F002406GAGMENIKWIRAMSDRLRDELSSEYDDDTKDLIIRAFMRGLYQDPSIVEELKSSSLIESDYFEDDKE
Ga0334995_0014648_6340_6594F002398AGGMLPLLHIFLLTSVDPIKNFVSLKTYISENAKAHCYVYFINEDIPDYPRVNIIEKSKFDFFAYLDTIGIEHTQVGSYYFFNRKPK
Ga0334995_0014648_6591_6902F009266AGGAMTDKERKILDKEIQYLCEQQDRVKAIREYTNINPGYTFQREAETIESLYKSVLEHRKHDKSMYFSAATSGWYVVYLRDKKKYKEGEKFRIKIYHTFVWSDNLE
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