NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0052433

Scaffold Ga0334995_0052433


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0052433 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3327
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023834Metagenome208Y
F026864Metagenome196Y
F068766Metagenome124N
F073256Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0052433_1782_1946F073256GGCGGMKLQEVDTIQDLKEWVEENMPGARLTVDSMGDVVIHTGLHSTMGGYLHEREEEE
Ga0334995_0052433_2210_2458F026864AGGMMSEQDKMAQFVFTVVIAPANKQYDVELWDFAGTEPKQLSTGGGSNWRTALGEALSKIELPTDKVEKTINDVIKEGVEDEGV
Ga0334995_0052433_2611_2787F023834GAGGMSEPTVEYWRAKAELCRDLALIQIEDEATEKEAGMNLMRMVHALSMVDAYNEGGSDDN
Ga0334995_0052433_2777_3031F068766AGGAGGMTTDNVVGFHPKNKLVNFYEIATEGGNAVWGGEDPHSAVQWLRQSPLNSRLLVSCWEAGEEDARLIIEPIDITKIVFAVMAGVQ

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