NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0056762

Scaffold Ga0334995_0056762


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0056762 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3158
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023834Metagenome208Y
F026864Metagenome196Y
F040479Metagenome161Y
F055450Metagenome / Metatranscriptome138Y
F068766Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0056762_1393_1608F040479GGAVNPASTTLLAQETLRANQEARLTELLNSLENVVDNLNYKSFTVYDTLTIAMENLRVALSNIATDADGTDTL
Ga0334995_0056762_1692_1997F055450GGAGGMEAENKRLRGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKQTDEQEGKTWIDLDGNTIPVVGVRVRTTEGRGAPILKENIHRSTDEGDNGGKA
Ga0334995_0056762_2279_2548F068766N/AMKEEVMTTDNVVGFHPKNKLVNFYEIATAEGNAVWGGEDPHSAVQWLRQSPLNSRLLVSCWEAGEEDARLIIEPIDITKIVFAVMAGAQ
Ga0334995_0056762_2523_2699F023834AGGAGGMSEPTVDYWKAKAQLCRDLALTQIQDEETEKEAGMNLMRMTYALSMVDTFNEGGSDDN
Ga0334995_0056762_2837_3136F026864N/AVELHQPKGSNNTNYKEEKMMSEQDKMAQFVFTVVIAPANKQYDVELWDFAGTEPKQLSTGQATNWRTALGEALSKIELPTDKVEKTINDVIKEGEESEG
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