NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0063923

Scaffold Ga0334995_0063923


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0063923 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2930
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013988Metagenome266Y
F047052Metagenome150N

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0063923_1173_1799F013988AGGMAAYTVTHKQLTDNYAVLQLLTEAEIEVGASVVITNVDATFNGTYIVYALPQYAFMGVDDEGDLLFDPLVTIPNQVLYAKTAADVARTAASGTLTITQICTWVTSAMLEDWLGIGTATASDAAFLTICASACSQFAWRRRMEAGYIDSLTTVPSQDVLLGTQMYGGSLYRQRGSVDQFASFQNMGVTPVMGLNGMIRQLLGIDRPQVA
Ga0334995_0063923_2679_2930F047052AGGAMKIKLTLTRGDKKETLITNLFAIAEWERLENRRVSDGRGIGASDMACWAYIMLGVKGETLPATWREWLKANPDVEIGVEDSTDV
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