Basic Information | |
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Taxon OID | 3300034062 Open in IMG/M |
Scaffold ID | Ga0334995_0155020 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1648 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F003786 | Metagenome / Metatranscriptome | 468 | N |
F035763 | Metagenome / Metatranscriptome | 171 | N |
F038230 | Metagenome | 166 | N |
F041020 | Metagenome / Metatranscriptome | 160 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0334995_0155020_1018_1608 | F003786 | N/A | MYGIDGDLAFYANIAKEIVKTFGQIAANEIEIAFRLFSAESLELDEDVKFYGKANMHTIGKILNGYMTYRRKIIASHDNEVAALRHQVQMEERGKAEREKLYAEFPTMIKEFTGKTFEDVPLYWYDMCLKFDMITYEEGEKRSLWDEAQAIALKEPPESLDLLTIRSHAKKIEQGNMKRAVVIAQKLAVWRKVIKK |
Ga0334995_0155020_27_452 | F035763 | N/A | LNTDFDPKESCAKEKVKDREPSETYLCFTAFASTYERLAGVTYPSDKNNFIMTAKDGANCKKLVSWLKKVSASEQAPDEMVTMFTTAAWQISDKWLKANFTISNIYSQANNIYTKFMYSNPAAQEKRRQEEIERLVNEYQP |
Ga0334995_0155020_449_688 | F041020 | N/A | MKQTPKEKAKELFDHYHILITAIGGELGNKILVTILAEQCALFFAMQMQQEKWDKKKYKAHSYWEEVEVEIVNIGMYAM |
Ga0334995_0155020_678_887 | F038230 | GGA | MQCKKDRNAYMREYMKKYRATMNEYTYKKIRERENQRLRDKYHAMSKEERQRYIEYQRTYHKLKQFTNE |
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