NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0211220

Scaffold Ga0334995_0211220


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0211220 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1340
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015970Metagenome / Metatranscriptome250Y
F042184Metagenome158Y
F061577Metagenome131N

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0211220_212_379F061577N/AMPRPKTEMTKSGKTIAVRATLSEWNEFKRLGGAKWLRPFLAKSIEKHQKTKETKN
Ga0334995_0211220_496_723F042184AGGMELDIDFCDLEIDIKTWVEWEYDPDYSPNEGVYDKFIWVAYLQIGNNRIDITDELSAKECKQIEKQIEESIDDSL
Ga0334995_0211220_710_1000F015970AGGAGMTAFNKAVWESYQQLNDDDIMDAIQGSVAIPLAIKSGDWEYAFDFIKNRIDTQMTRRAELSLYDHVKTTWVDPDDELRILRTWWLKNEYRGDKDET
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