 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034063 Open in IMG/M |
| Scaffold ID | Ga0335000_0000057 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 81639 |
| Total Scaffold Genes | 114 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 49 (42.98%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002621 | Metagenome / Metatranscriptome | 542 | Y |
| F005206 | Metagenome / Metatranscriptome | 408 | Y |
| F007856 | Metagenome / Metatranscriptome | 343 | Y |
| F012771 | Metagenome / Metatranscriptome | 277 | Y |
| F016961 | Metagenome / Metatranscriptome | 243 | N |
| F028149 | Metagenome / Metatranscriptome | 192 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335000_0000057_1557_1976 | F005206 | N/A | MKFTVDRSQAEVKPFASPGEYIVTVNSCKDDNLDKNGNPVCTLRYKGGNGEVISDRFVLKETMMWRLQALISATEANIADGDEFDFSIGGAFFRFLQGFVGLQLVVVIEEEKYTDKNGAEQVTLRVKRMKKVPVDVDDI |
| Ga0335000_0000057_1_249 | F007856 | N/A | MTNKTIVACDPGVNGGFAVHTKDGILLFAMPESLPDMAQLLSGFKVADSHLWIEKVPKFVSKLTPSSSVATLHENYGIVQGLA |
| Ga0335000_0000057_221_355 | F016961 | N/A | MSTALTIISMAILLPLCVIAGIYVGHSLTIKSQQTNDKQNNRSL |
| Ga0335000_0000057_62719_62943 | F002621 | N/A | MEKHPRLSRTIWLIALLDCLGCQMTKVVLVPSGDPVLLAEPTRASVYAFDKAGNLVGPSTVKIPAGWYALPKAK |
| Ga0335000_0000057_66249_67856 | F028149 | AGGAG | MASGNVISCKQFASFLVSQEPVYDKEVLKDIRPFDGMIGYYNTGSFDAYSGTTHRFDRFNSVFPNVTGAWENPTGAACTGQPCDPTENKIGWGWSRNEYSLEKQSWGSDILCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAAELSSSLLGGNAFACALGLPAINFSWVGAGYVTLRVTDNAAAPITAASLGRLTPEILQSRVTRQYFLGAIQAGKEGYDSLQLHTDKDTFRYLQKTNPTLYDAWRFGVFAPAAKEFFKYGFMGFVGDFMVKVLQFPLRFNPTATAGNYTLVLPYKNVAATEGIKSVFNEDYDNAHYQISYINNPRALRVMPFRPEAVNPNMPFMVRDYGGRWKFATNDLGADCSGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVDRGCVEIIPICEADAESYAAQNYNSADPVCGVTVQFTAIANDAGNFVIGTTGILCDDNIVTNAGISEATPAALVAALQTVWDAEFGTASGTWSVVSGNVIQLAGSAIGTTTEVVPCTNVTLEFAI |
| Ga0335000_0000057_80871_81059 | F012771 | N/A | MKSAIGIGIKGTSKPKRPTAKVLVVSDETHKRLKDYAMKMGYKTQHIADEAVAEYLARKESK |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |