NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335000_0031577

Scaffold Ga0335000_0031577


Overview

Basic Information
Taxon OID3300034063 Open in IMG/M
Scaffold IDGa0335000_0031577 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3904
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051869Metagenome143N
F105001Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0335000_0031577_3058_3903F051869N/AMMTKFVCYPDADNPTTGYDLDLSQDTDIAITFSVQDLADITKRRGAFSKTIALPSSKANDIAFRYAYNVQSFVGGFTPNKQVKCALWNDGVQVFRGTMQMLSMSVTRGVATYEVGIYGEEVSLFKAMEGVKLVDTVGVTGMNHTFTESLVTGSWDDTFSDASGFVYGAVDGLGLPHCFNLPNNYLGGVIANAYRSLFRLVPIEIMRPNIWVKKMIDLIFAQHGYRYESTFFQSTEFERLVLPYAGEPFTQASGENNCYVQASGYVSDAPWTYTVLYDNDSSP
Ga0335000_0031577_554_1117F105001N/AMKLLNRLTVAQFQELTAIDPDMGALRKKVNTVCIVDGFDQNAVEGWTIEQLNARAAVIDEECGALSMLPAKRVVRIGTKRYRMEWFIDQMSAGQMMELLNYQLTSDREVVANLHLLLASLTREVTWYGKTLAYDGGKHADRAEAMKKAKMADVWGFACFFLRHSEPLLKIMQTYFAEASKKKTAAKE
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