NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335000_0065210

Scaffold Ga0335000_0065210


Overview

Basic Information
Taxon OID3300034063 Open in IMG/M
Scaffold IDGa0335000_0065210 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2564
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001964Metagenome610Y
F086598Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0335000_0065210_2299_2544F001964N/AMIRNQFAPPKFKIQISGAIGWSDMKEKVVSYQTVEFATRKEADRAAKELNPGEYTQGRIRVVPFEMAEDYDVYPTPERSKP
Ga0335000_0065210_669_1115F086598N/AMETDKLTQLEQNFATLAGFVERATKSLGRIEKTLKEHERKIDEALQRSSYQEDDDDSFEGFGPKPECQPFNPNAETYTLELRNGPYTIRRDDGESDKEWQRRKDHLMDQRVTFLNGSGVNGTPEQVAYLQRIEQRLGRKIFENPLATT
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