Basic Information | |
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Taxon OID | 3300034063 Open in IMG/M |
Scaffold ID | Ga0335000_0104134 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1937 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F041161 | Metagenome / Metatranscriptome | 160 | N |
F079522 | Metagenome | 115 | N |
Protein ID | Family | RBS | Sequence |
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Ga0335000_0104134_1028_1432 | F041161 | N/A | MMSRQIADSIEFANDFLPARTTCQEIWYILKDNFIYKNDPPGIELLQSFPSLMEDNYWGIPGAGDCDCFTIAALACARARNIPARAVIVGNSSQAPTHIYAQLFDGSKFIDFDLVSSSYGTTKAYKNKQIIKLH |
Ga0335000_0104134_167_403 | F079522 | GGAG | MNQNVNYGKDREAIVPYDVAIWWHLAFDVNKSIFNPTYIPRELMEEIQQLQRRSIIKALPDSDPGRKWLILRFFPEGI |
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