NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335001_0000331

Scaffold Ga0335001_0000331


Overview

Basic Information
Taxon OID3300034064 Open in IMG/M
Scaffold IDGa0335001_0000331 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26834
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (46.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004049Metagenome / Metatranscriptome455Y
F004206Metagenome / Metatranscriptome448Y
F007030Metagenome / Metatranscriptome359Y
F018915Metagenome / Metatranscriptome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0335001_0000331_18270_19094F007030N/AMLEQNTNQQTSMIDPFIYAQQAPTSKVIPETTSGTRPSIHVSLYAYGGISAACLMSWVGLTANFATSDRQTDLRTIREDALISRSRCRATKWFLDSGKDVWIQIDHDIEFDAQDIIRMAELAHEHQATVCIPYPCRTLPLRPALRIDTENVKALRMQTSDSESATELVPIRMFASGCLAIPRRCFMSALDSLGGLEVPHPYRIDWCKDTRVDQFPTLWMPFAMDSASGDYEYLSEDYAAAVRLSLFDVKHYAMHPKKHLNHWGEYPYGFKPYVG
Ga0335001_0000331_2332_2736F004206AGGAGMIHQITDYLLRKLPDSFKGWTREAVEDYVLFHAQQGTLKIATQDEQVVAVLVGWRQMGPEPKAWTWQASDPNGDHWYWHQFAADCAVFAMAVAAKFFHDRPESAILPAIGYRNGKLTTYKKGSMPIYRVASKHL
Ga0335001_0000331_25386_25604F004049GAGMIVPIGPAAFIFKHKRTGQIVVVPNERWHELYDKKDDWEHTASLNACGALQYIIDAKPAERKRYIKSLTEKP
Ga0335001_0000331_8148_8318F018915AGAAGVNWIYQILKALLDWIRQTPPPDVDHGKAPKKLKADLDARIADLPGLPDNGGNGPKR
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