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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034066 Open in IMG/M |
| Scaffold ID | Ga0335019_0006425 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7964 |
| Total Scaffold Genes | 34 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (64.71%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013514 | Metagenome / Metatranscriptome | 270 | Y |
| F014121 | Metagenome / Metatranscriptome | 265 | Y |
| F019061 | Metagenome / Metatranscriptome | 232 | Y |
| F029435 | Metagenome / Metatranscriptome | 188 | Y |
| F038911 | Metagenome / Metatranscriptome | 165 | Y |
| F049575 | Metagenome / Metatranscriptome | 146 | Y |
| F055721 | Metagenome / Metatranscriptome | 138 | Y |
| F067687 | Metagenome / Metatranscriptome | 125 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335019_0006425_1252_1464 | F049575 | N/A | MRKMTKLSAADLMVIHNTLYKSLNVVGNSIWTQETRERVMDKVSIIMEQMNAEVVCGDVEPIVVSGDVGG |
| Ga0335019_0006425_1981_2157 | F019061 | GGAGG | MTEPTDTEILEFLLNQFQAHSLKMNGESDWKFMSSGFPMNHAKGQTVRDAVITAMRAK |
| Ga0335019_0006425_2605_2787 | F029435 | GGAG | MTKQELKELITPEFLSTLHSAVECCNWKVDMIETMEFCNWCYRLAGQPEPYYDVDIEMVD |
| Ga0335019_0006425_3206_3397 | F038911 | AGGA | MVMPEKVKFVTITRVIDARNGIHYLDAIDVNGNHWTAEMDSRQEKWLVYIKGWKKDPQQPLEL |
| Ga0335019_0006425_3834_4043 | F014121 | GGAG | MMTNTAYQIWETFKAELIVEPTEDMKQALASSIRVISSLIYRDGVLANEPWLTHTAQELNEIAGDVEAL |
| Ga0335019_0006425_5174_5413 | F067687 | GGAG | MTNLSPQTQTIIDAADEVFSNGGTIREGFAAALRVLADNVAPENYACFSGHREWDEALETRNESIREAILDIATELEAL |
| Ga0335019_0006425_6337_6582 | F055721 | GAGG | MSKEEYYKWIEENDTYPEHSHKWIVRTYIDSYDGTIEEFYRNFGTFETKEEAKEFIENYKVKYTTKGFITRYSIQGLCEVL |
| Ga0335019_0006425_716_868 | F013514 | GAGG | MDLEELQKYLDDNNITFEEWMRANMITDEDRKYFDKIWMDAIYKNFGEDT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |