NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335019_0067716

Scaffold Ga0335019_0067716


Overview

Basic Information
Taxon OID3300034066 Open in IMG/M
Scaffold IDGa0335019_0067716 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2422
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014605Metagenome / Metatranscriptome261N
F069672Metagenome123Y
F091646Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0335019_0067716_1846_2049F091646N/AMNLLQKDEIGVPSTLVAFVANVFQAIGIDFLNVVLTMIISLLSIVYLIYKIKNEKAVHDKRENEKRN
Ga0335019_0067716_2148_2420F014605N/AAIALTDIEGNAIQNEKGEEMLLSKMVGNALFAAEEKEDPIRLYELAKKIYYSEGEIEVSKSDADLIKEKVKAKGFTVLVLGPLYEALKEK
Ga0335019_0067716_318_752F069672N/AMKYLFILFVFFSFQSQAQYYIMAAPNVAFDTKLQDTKNLLGGTIEVGKYFGDTAIGINSGFWTFDKKDFYQELMATFPIYERFSVSAAIGYFYWHKDITMEYDLNYTVPMNDGYSFVLSYGAQSAFGDTFGAYSIGINKDFKLK
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