NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335019_0213899

Scaffold Ga0335019_0213899


Overview

Basic Information
Taxon OID3300034066 Open in IMG/M
Scaffold IDGa0335019_0213899 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1242
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001120Metagenome / Metatranscriptome772Y
F001807Metagenome / Metatranscriptome631Y
F020342Metagenome / Metatranscriptome224Y
F103180Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0335019_0213899_290_493F103180N/AMIGFSIEFKRWYFVIRGPKGRVYLATGFAKRMPVITLTGAYMLDQCIGTWPGDETDEELLHQLKDIR
Ga0335019_0213899_490_750F001807N/AMTVLAIEHTSFTDTHVTVTAVVDDMRLLYRATRFEPEEWAPALCTTTIELDPGESIPLDEDGFCSYLDDLDPHWQLVDTSDYDLDS
Ga0335019_0213899_750_935F020342N/AMSAYVDYLNMFDRINLAACAQRRATDNLLDSNRWEGEYDTARLWMKYRLIKTTTYSYIDE
Ga0335019_0213899_996_1193F001120GGAGGVTKKSPISFDRTIHGVNITEHGIKSVSKQIKLGPFQLTVNANPNGVKGSVSIPGTGLSIPNIKLF
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