Basic Information | |
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Taxon OID | 3300034068 Open in IMG/M |
Scaffold ID | Ga0334990_0030235 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2892 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (83.33%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001562 | Metagenome / Metatranscriptome | 670 | Y |
F003690 | Metagenome / Metatranscriptome | 473 | Y |
F004840 | Metagenome / Metatranscriptome | 421 | Y |
F009143 | Metagenome / Metatranscriptome | 322 | Y |
F017995 | Metagenome / Metatranscriptome | 237 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0334990_0030235_1005_1172 | F017995 | AGG | MSKMKQYIEIIAANCDECGGAGFVFFGDENTYDVEPCSCIDEISDELNVDWVNNV |
Ga0334990_0030235_1767_1961 | F001562 | GGA | MKSQLEKDLEIKESFIDLLNDCYPTVKIGYSTFTPAEILECCDPIAFSIGLIEHEDYLAELEDE |
Ga0334990_0030235_2072_2224 | F003690 | GGA | MIENGLELLLSEYGLELDSFLGSIYIPWHTILITTALLIAYKIYKRKKNK |
Ga0334990_0030235_2224_2394 | F009143 | AGGAG | MMTKWDTIQADVADAYTYLDEEEMYNKALEEGAIDLDADDFDEDELHKSLTLDWDN |
Ga0334990_0030235_809_1012 | F004840 | N/A | MYKLTCAYDSNAPHWSAEYENEFGAWENFFRFTDWGMANEYSTVNLSTPTGKMYTKLFYRSGKVVVK |
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