NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335028_0000022

Scaffold Ga0335028_0000022


Overview

Basic Information
Taxon OID3300034071 Open in IMG/M
Scaffold IDGa0335028_0000022 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)119771
Total Scaffold Genes156 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)96 (61.54%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009397Metagenome / Metatranscriptome318Y
F010749Metagenome / Metatranscriptome299Y
F011368Metagenome291Y
F086659Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0335028_0000022_107334_107591F009397N/AVDILHGAGTAFDINIRMSEQYLLPMARNTRTGQTVKTQDLSGLKYTLNQRALADIAADQCAEKMTARTGDVWQGFVQIYTPRPRS
Ga0335028_0000022_109168_109437F011368N/AMNHQLTHRDIAGSHLSPGDHCLVTEHNRLILARVIQIYDSSNQVKLQPLKSSAGGRRSTPSQKTIRRECYNVYRIADTEITISILRGAV
Ga0335028_0000022_115896_116117F010749N/AMKKFTFWRNAIISELYVVDAATEEQAREMLQNGEVEVFNEEWIDWATDDFELEHVEIIDPLYRMVKDYDTAGT
Ga0335028_0000022_21617_21949F086659AGGAMPTVFKHALVTQIGTSPTDVVEIGAGVRATVIGCNLANVTEYDTVVVDVQIVGVDTTVVYYIKGLTIPPNTSVKVITQGEKLILPAETELRMVSDTADSVDATVSYVEIS
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