Basic Information | |
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Taxon OID | 3300034071 Open in IMG/M |
Scaffold ID | Ga0335028_0000022 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 119771 |
Total Scaffold Genes | 156 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 96 (61.54%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F009397 | Metagenome / Metatranscriptome | 318 | Y |
F010749 | Metagenome / Metatranscriptome | 299 | Y |
F011368 | Metagenome | 291 | Y |
F086659 | Metagenome | 110 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335028_0000022_107334_107591 | F009397 | N/A | VDILHGAGTAFDINIRMSEQYLLPMARNTRTGQTVKTQDLSGLKYTLNQRALADIAADQCAEKMTARTGDVWQGFVQIYTPRPRS |
Ga0335028_0000022_109168_109437 | F011368 | N/A | MNHQLTHRDIAGSHLSPGDHCLVTEHNRLILARVIQIYDSSNQVKLQPLKSSAGGRRSTPSQKTIRRECYNVYRIADTEITISILRGAV |
Ga0335028_0000022_115896_116117 | F010749 | N/A | MKKFTFWRNAIISELYVVDAATEEQAREMLQNGEVEVFNEEWIDWATDDFELEHVEIIDPLYRMVKDYDTAGT |
Ga0335028_0000022_21617_21949 | F086659 | AGGA | MPTVFKHALVTQIGTSPTDVVEIGAGVRATVIGCNLANVTEYDTVVVDVQIVGVDTTVVYYIKGLTIPPNTSVKVITQGEKLILPAETELRMVSDTADSVDATVSYVEIS |
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