NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335028_0000290

Scaffold Ga0335028_0000290


Overview

Basic Information
Taxon OID3300034071 Open in IMG/M
Scaffold IDGa0335028_0000290 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38189
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (73.21%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000934Metagenome / Metatranscriptome828Y
F002085Metagenome / Metatranscriptome595Y
F002997Metagenome / Metatranscriptome514Y

Sequences

Protein IDFamilyRBSSequence
Ga0335028_0000290_22593_23234F002085N/ALVGAIRGNGAGAVNVITPVEGTSNIRIADFLRITTTSGTYLMTTAPSNMTIAAVDASPFQSVGTLLAIGQVQRDIKSTANDTTVSLSGIDTSMLGFVLGQNVKGSPIQLWHGFFDTNGALITTGGTGGLYQYFNGIITSFSIGEQWMDEARMYVGTISVSASSIQLILQNRIAGRYTNNSSWQFYNSGDTSMIRVPFIETINYQFGKDAAPNS
Ga0335028_0000290_23195_23875F000934GAGMSLQTILSICEAVGINDQRFVGQTLSRNQKLVTSEILTVVPFQFEMRPMNYLRYSESRSILNSLRIPDKSLQQYLNFGQTGWLNYVKYQGQMTSTQIGNCLWQVSSANKVLVLGSLPALASTDYLFRIGDFVQVGLYSYIVTADVQRGGGSTVNVPVHRNLLVTLTSTVPCVAGEFGTTVAMGGTTYTGVTFPVVLREYPTYSLVPTANDSFINWSGPFVAMEQVL
Ga0335028_0000290_28598_28942F002997N/AMSIRRYENISINNLTFSQSSFGQQTTAQTLWFNTRAEVSEVANSLKISEKYRVYQDLVNLTIRYTPNAKEIVDNQNLYSVTWRNHTWRITDARESNDRMSVKLLCYRTDPVTAV

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