NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335028_0000568

Scaffold Ga0335028_0000568


Overview

Basic Information
Taxon OID3300034071 Open in IMG/M
Scaffold IDGa0335028_0000568 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27050
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (7.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036705Metagenome / Metatranscriptome169Y
F070121Metagenome123Y
F070154Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0335028_0000568_13671_13850F036705N/AMQDLLDYNRFRIETLQSRVCELESLLSTLETYCFELADAECTLEYKTLIKSELYKLKQQ
Ga0335028_0000568_18725_18859F070121N/AMKNKQTCLQRINRIMKFNYNRGLNSERVNAVYRKIIKLKFEGSN
Ga0335028_0000568_22538_22897F070154N/AMIGLKYSTRIVILFDNVVIKIPISRRGYLQGLNEKYIWNKYKQIGCLAELKWIFMGVVCQKRYKPVKRVPNTKVWHIKELIPEFDFDNCDLYKVENWGIENKNYILLDYGINKHIASLY
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