NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335028_0001732

Scaffold Ga0335028_0001732


Overview

Basic Information
Taxon OID3300034071 Open in IMG/M
Scaffold IDGa0335028_0001732 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15704
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (58.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000468Metagenome1102Y
F006539Metagenome / Metatranscriptome370Y
F032636Metagenome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0335028_0001732_15149_15343F006539GGAMIETTTAWIVLYCILGYFIGWGIYSTIKDNAFQSGYWKGRKDGYDMHRRITDSKRDQVFDYDKN
Ga0335028_0001732_15439_15546F032636N/AMAVLQHLESRMGLETDYKHRTIDDHIDDFEDIGVI
Ga0335028_0001732_3304_4551F000468AGTAGMTAWSPDWKLTVAGVDYTDIAISDIQHQAGRTDIYQQPNPSYIQINFVALSGQTLPFDINDSLSLQVKNTAGNYVNLFGGDITDITVGVQITGAIATVVQYSVLAMGSLVKLAKELYSGTISQDEDGNQIYDLLSSVLLGTWNDVPAASTWATYSATETWANALNLGLGEIDTPGLYTMENRAAQVDTIYNIASIIANSAFGYLYETNNGDIGYADADHRQNYLLTNGYVDLDANHALGQGLSTITRSGDIRNDIYINYGNNFGSQKTATSATSIATYGYKAESIQSVLHSAVDAQAVADRYIAQRAFPQPAFQSITFPITNPEIDNSDRDNLLGVFMGQPLNIQNLPAQISSGEFEGYVEGWSWSTRFNELFLTINLSPVAYSQVAMRWNTTPITEAWNTLSATLTWEYATIVA

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