NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335028_0002708

Scaffold Ga0335028_0002708


Overview

Basic Information
Taxon OID3300034071 Open in IMG/M
Scaffold IDGa0335028_0002708 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12688
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (18.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002778Metagenome / Metatranscriptome530N
F009808Metagenome312N
F019647Metagenome / Metatranscriptome228N

Sequences

Protein IDFamilyRBSSequence
Ga0335028_0002708_246_650F019647AGGAMKIVKGVVKYGAGAPREGQYGPSINILVTLEDQSQVRVYGKPGDVIERYKSGQNIQLIDDKGKYKVVEDEPQTMPAQAEQSDKPDLAALVFEMSAIYSQAYIDIYNKISEAGVPHENATAATSTIFIQVFQKLR
Ga0335028_0002708_2690_3100F002778N/AVKEYNAQMMEIKAFCDELNTWISVAPSAEHLEECDEYLRQLSAYYSRYTVISGMNESIYSQLLMMCIRDMAEDEYKRIKHSSTLTDYYVKGKYPKATAIFEQCRAVKQLLIITSDNYRTLLSSFRQERILVGHMTT
Ga0335028_0002708_5331_6230F009808N/AMKKNFNNQNFEWLFQDITSSMPKIIFTGIILTYLITAALNVYFLPLPLILSIPASLMLQFGRFAVVFIDFLNPSDKRSKYPPRVAAIATVIALLELWFSIQGQSNGAEFWAMFFFIGAIICFGYVLEIQFIEKGIEAYGIGVKEPRTRRRVVREVTKTNISSTQPIKFTMAVCFMLTVAYLPAQNNHFFAYNTMSVEKIDKGLLERRYYSEANESYTIDTITYDLLSGINLWDGYSRTTYDNTMFMTYGTQNFEYFPLAGVWKYKNKYYDYIGLLKFVSKYFKRNFLNKKITYGKIRRH

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