NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335028_0007761

Scaffold Ga0335028_0007761


Overview

Basic Information
Taxon OID3300034071 Open in IMG/M
Scaffold IDGa0335028_0007761 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7579
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (11.76%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031032Metagenome / Metatranscriptome183Y
F033727Metagenome176Y
F088280Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0335028_0007761_3921_4088F031032N/AMFMNPSKHKSEWNALRLIMKVSEINYCLFIDYRLYSLEIHAVEKDEFETYKYNPN
Ga0335028_0007761_5288_5647F088280N/AMRSLFMNCPECDGDGYVTIDLNDTHIPYEQNPVDFTCMSCDGKGLAIDKDEVEDRMGIIEDMIQGMQTRMRLHSDMIMTCKKGLLHELSEKYVYRLDTCARALGRLLNYQKKLYKLAEN
Ga0335028_0007761_5804_6007F033727AGGMREQAKVLSEANEVTRAMVKHYLQKHEISLNAFSKLVEVRQPNLHKFINGSSLSSKTIEKLGIFFSK
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