NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335028_0028218

Scaffold Ga0335028_0028218


Overview

Basic Information
Taxon OID3300034071 Open in IMG/M
Scaffold IDGa0335028_0028218 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3882
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053997Metagenome / Metatranscriptome140Y
F097224Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0335028_0028218_1_378F053997AGGAGMASIINGIKWIAANTGIDEMLLEAGRAFLATSIAVALGLGIPLLDISGGDFRMVLSAGLAACLQVVVRALNPEDAKFGVGKAKVERANQDAVNQIQGTSIDLDGDGIADEYSGSLANEVFPDDEEN
Ga0335028_0028218_388_1086F097224GGAGGMATHFRVKSQLDHEEKGGILDDCGPSSVAAAVSWAFKYTKDFSAADGIAAKEKATGHKDKQGVSDNGSSLSDLIKSARVLGAEARFAKSWDDVVKSAKAGAGLIVWVQQPIGYPEGLQVSNWHSKWAAYWSKKDNSHIKAGYGHMTAAAYDPELGWQWACPTRTGKGKEQFGVIVSEAQLKQIADSKRVSKQHKGEPHEHVIIISVKGAVAPVAPAAKPVPCPACGGTGVNK
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