NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335028_0035597

Scaffold Ga0335028_0035597


Overview

Basic Information
Taxon OID3300034071 Open in IMG/M
Scaffold IDGa0335028_0035597 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3422
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035679Metagenome171Y
F061680Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0335028_0035597_1139_1429F061680N/AMQVTIGIDVAYFDYDDVHGNCEFKITNITDESYEVELSNVSATQVIGEVELDYILTDTELDQLKEEIMWCIQDTNLVRDMQELDDDFDEDEWRYDA
Ga0335028_0035597_2636_3100F035679N/AMRLSIIILSLVSTIFATSCSAPKRAQWHYKKALKNGLQVVQDSDTIRITTVDSFPVIQNDTIVWEKLYTTKDTVIQFNNVYVPKTRWQTRIEYRYKTKVERIRGKTIYKTAQAKEVVKYKILWWPVIVAFILGILLRFLIQKGLLDRIALLFKL
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