NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335028_0046567

Scaffold Ga0335028_0046567


Overview

Basic Information
Taxon OID3300034071 Open in IMG/M
Scaffold IDGa0335028_0046567 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2953
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030669Metagenome / Metatranscriptome184Y
F044496Metagenome / Metatranscriptome154Y
F047055Metagenome / Metatranscriptome150N

Sequences

Protein IDFamilyRBSSequence
Ga0335028_0046567_1382_1648F030669AGGMTYYIYGAEDSKTTWKAETLLTVCRRDYKLFLLGQDYTVDQLQILVPNTNFVPHIYHGAKYIGGIKELYDYLYSEVKHEKQFQNETKE
Ga0335028_0046567_1645_2049F047055N/AMKKSCTLHSIVATLFLCNTAYGKVTLVEDSSTKDGYYMAKVINVKPIIEKVPYMTTKNYCQKQYAITHYSGPGNNTLVLGVTPPLSTPICKLVNEQIYHNVVKGYQVTYDFKGTLKTAILNNEPSGYVQVYNAP
Ga0335028_0046567_2053_2412F044496AGGAGMRNISIALGTLLFATSAFASEIISYELARVIKVDPIGNVRAISAPRMSCTNVEPTEGAGAPVQPQQQNCVTYSDREFRYNVIGFNVMFEYKGQVRTARMKNDPGNTIQIKTVTRIFAVE
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