NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335028_0071376

Scaffold Ga0335028_0071376


Overview

Basic Information
Taxon OID3300034071 Open in IMG/M
Scaffold IDGa0335028_0071376 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2316
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002302Metagenome573Y
F012337Metagenome / Metatranscriptome281Y
F014973Metagenome / Metatranscriptome258N

Sequences

Protein IDFamilyRBSSequence
Ga0335028_0071376_1189_1557F002302GGTGGVPAPYTDLFNEALDDLSATLTAVTGLRVVNDPTKLVPNCVFITAPSFTTIAGNGNIVRMDFPIKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQTA
Ga0335028_0071376_11_529F012337N/AMLASDNVAADAITAGATASGSTWTVSSTDPSSLFNALYTAAYNILTATNFLPDHCFVDPNVWLYLGKQLDGDKRPVFPYVGAAGLQGMNAAGTSNITQMSTFNPFGLTLVADKNFASSTLVVARGEAIEFYEQVRGLMSVELPSTLGRNFSYAGYVSTFIADSTQVQSILIA
Ga0335028_0071376_2085_2315F014973AGGAMRLKLKVDLQDGVAPVELTTNMFVICEWEKTEGRKISDGKGIGYTDLVCWAYNLLKLSGQKMPATYRDWVKENPNMT
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