NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335028_0073008

Scaffold Ga0335028_0073008


Overview

Basic Information
Taxon OID3300034071 Open in IMG/M
Scaffold IDGa0335028_0073008 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2287
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006979Metagenome / Metatranscriptome360Y
F009327Metagenome / Metatranscriptome319Y

Sequences

Protein IDFamilyRBSSequence
Ga0335028_0073008_1839_2045F006979AGGMMAKTFKADGEKHTVKKNKKGEVIVDHAGNKGPYDKINLTKKSGSKTIAQGVAATKKWHNTNKSGRGK
Ga0335028_0073008_751_1284F009327GGAMRGTKVQGRFKIDFENKSINEGIVDELRDPVGTEVDWWKWDDAALAADYANWVDPIYDVSNQENGKGRRWNDPFKMPVVMAQIMRGTNVMNERGFYTVDTLRLVISVADAQRLIPELVVDPNPNIQDRVVYQNGVFVPTRVLPRGHYAENYAVVTIDCNQVNSEELVNDPQFQAYAL
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