NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335028_0101708

Scaffold Ga0335028_0101708


Overview

Basic Information
Taxon OID3300034071 Open in IMG/M
Scaffold IDGa0335028_0101708 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1881
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003691Metagenome / Metatranscriptome473Y
F005299Metagenome / Metatranscriptome405Y

Sequences

Protein IDFamilyRBSSequence
Ga0335028_0101708_236_628F005299N/AMNKNITPNHLIDPIDTPNEIWESKVGYDSANKRMVAKVYKHLYNVMTLVSKPSWSAIIREMLIEDGRLNEVKVNGYYSTIRKNLKDIGVIQYNGRKGLSKGKNWDRFYSEEDWSWFITNTNSGGYGIIVK
Ga0335028_0101708_994_1365F003691N/AMNNRNTNEFNQFTELSYNTSRNEKPQYRNFAGSKFNIPTKPNSIVEFKDFMGRTHLVQCKNNTEVKKQMKFFAELKKESLTISQIISSYPMKMGKIEKKFLSEVKKDLRSIGLNKRMIDLVLG
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