NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310127_002561

Scaffold Ga0310127_002561


Overview

Basic Information
Taxon OID3300034072 Open in IMG/M
Scaffold IDGa0310127_002561 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18564
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (20.51%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001981Metagenome / Metatranscriptome608N
F003660Metagenome / Metatranscriptome474Y
F005845Metagenome / Metatranscriptome388Y
F008996Metagenome324N
F014844Metagenome / Metatranscriptome259Y
F035673Metagenome / Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0310127_002561_12750_13199F001981N/AMIHPTLITIPKADICKAEIAQIAQQLTDRIKDGEVNPVEAHIKLKAIVKALEATIKATEQTVADEASKHGKTFRAFGAEITLKEGTLTPNYEEDEVYADLKSQMKAREELLKIAFRQAGKTAIFDESTGEQIPVCTAKATKASIAVSFK
Ga0310127_002561_136_870F008996N/AMKLLANIAYHHNPERMPNLIRVIEAIKSYPVQADIFVDTNDPEVVGLLTDQPVTVHAHTQLSHPWMLTAVHRNRIKETYKYFDWVAYFEDDMMLPKEGFVNFIERFDSMFADGLYPSFTRIETYEDKEGECTPDVNEVLPSSVWCQYNGKDYVSLPFFINYHAFWMFSTKRLKEVLTRNPEELDKIPNNGLFRESLASFPIWSLGLKPMLEFTEQGELAEHCKVFHLTNNYKHGSTNIKTLFKR
Ga0310127_002561_13997_14116F003660N/AMNHETQAKLKAALVTGYILLATMLGIAFFGRFLFALITN
Ga0310127_002561_17885_18064F014844N/AMLIGYGYGYPTNQLLGGVSDPALTAWAAFNTRATADGATAAEAAVNACLFTRFAAIFNF
Ga0310127_002561_4027_4470F035673N/AMVLCAALRQAEAVFLHDLLWVLDGCPPDPADLPMVLGSNPRPRIFSHRNNHSGMDLQMTTDQFLVAQKHRKYWDQYIASLTMRLPPDAVAELQAILTAHGRPPTNWWCADCVKSALQYIYLQADLFAEFNQNTVTIPLTNAPTDTER
Ga0310127_002561_5573_5725F005845N/AMKTTPTDFRRWQIHIRKECVNCTKPDHSETIRRWRVNYTLLGRILQAKNA
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