NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310127_009852

Scaffold Ga0310127_009852


Overview

Basic Information
Taxon OID3300034072 Open in IMG/M
Scaffold IDGa0310127_009852 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7020
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020893Metagenome221Y
F023579Metagenome209N
F040084Metagenome162N

Sequences

Protein IDFamilyRBSSequence
Ga0310127_009852_3062_3286F020893GGAMPTEIYVALISAVAIVSAAVLPAVLIERARRENADDHAYVRKVLSRVERKIDNHLEDHDNGTTRRNTAKTKQSG
Ga0310127_009852_3240_3452F040084GGAGGMGLRDEIQPKLNKVADLAKWLDDQPNGEEWYDLIYDQQYSSQAIASLLAKHGFKCDFNVVHRFRQKHVAK
Ga0310127_009852_5249_5485F023579GAGMCLPDVVGDNGDSFGLMQIHTPSWCKPNKYWPRGYLQTQGMINDCTELFDPLTNLWVAWHIATKYGWENWSTYDRVVG
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