NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310127_026515

Scaffold Ga0310127_026515


Overview

Basic Information
Taxon OID3300034072 Open in IMG/M
Scaffold IDGa0310127_026515 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3365
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001120Metagenome / Metatranscriptome772Y
F001165Metagenome / Metatranscriptome760Y
F001807Metagenome / Metatranscriptome631Y

Sequences

Protein IDFamilyRBSSequence
Ga0310127_026515_2078_2338F001807GGAGGMSVLAIEDTSIDGTNVTVTAVVEDMRLLYRATRFEPEEWAPALCTACFQLADDEQVPVDEDGFCSYLDSLDLDWQLVDTSDWDLDP
Ga0310127_026515_2579_2779F001120N/AMTQKKSSFNFDKTIAGFNITEHGVKSYTKSFQLGPFQLTFNARQSGVHGSVSIPGTGLSKRNIKIL
Ga0310127_026515_3113_3319F001165N/AMSTNKPSIPNSVDSQKLAFMQLTAKMRESADKYGMGFVGGFISPDGEAFVMTNMNEEDTQALLPDELK
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