NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0000069

Scaffold Ga0310130_0000069


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0000069 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)113240
Total Scaffold Genes139 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)86 (61.87%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012344Metagenome / Metatranscriptome281Y
F012775Metagenome277Y
F020904Metagenome221Y
F027849Metagenome193N
F027851Metagenome / Metatranscriptome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0000069_45472_45954F027849N/AMSDPEFIESIECKEIAEKLVSKYYPFIGYVNLDLVHFVEMDGYKGKNAPPYIMSGLTQSWARGILQSLGNGKVYCLGVWSDLWEELEQSKKEWIIFRCLYSISPSLDGKIRTFDVQDYGFITEYFVRTGFGPYWMLKEGLPSLLEGTHALPLILPMEDDD
Ga0310130_0000069_90660_90875F012344GAGMKFTEVFDALMEGKPITRTSWEDKYLYYDKEDKAFVYHYSEDCELWTWSLDLEHRELIADDWDIDFWDTEE
Ga0310130_0000069_91669_92220F020904N/AMDKLPKNQKYYYDVEIKKAKFNKAAMNYIDPGEDYLPYSVENKHIGSSFDSFLKTNNIELKRDINWAVKMLGHGKMMSREGNPSLTLFPKKYDHAESTITTEDLFAEDWVVVPNKLFKDVLDDLNAGKTIRRKSWHPDWGVGKYARYGKIIYLDLIADDWEVVDVVAEVNSVQEKILKDRNER
Ga0310130_0000069_95792_96025F012775GGAGVKLFSQITRPLIALKLNVRSQKWPEDYYIYRDEEKLMDSMGNEFYYSWEEFIRLHQHILNNAGPIWEIYEEVGFNNL
Ga0310130_0000069_97290_97484F027851AGGAGMSILSKLLKKTVGVPEININKLPFANKIVGDWETKNMEELVKQLPKETIQRLIDACNSELEKRS
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