NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0000499

Scaffold Ga0310130_0000499


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0000499 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30968
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (29.63%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015723Metagenome / Metatranscriptome252Y
F033779Metagenome / Metatranscriptome176Y
F040643Metagenome / Metatranscriptome161Y
F052262Metagenome143Y
F079994Metagenome115N
F093771Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0000499_10344_10490F052262N/AMKPSYLGYLIELLQASEYRNAPETIEIAKGKYAIPKTWQEFLKRRRWP
Ga0310130_0000499_20977_21207F040643N/AMKARLEYNLPEERPEFELAVNGAKMQLVLWEMDQWLRVQYKYMPDNEYSKDKYETYEKCRDKLRDLMLENGVDINS
Ga0310130_0000499_22_156F079994AGCAGGMEHLTQRLEVLKQQEANLLMQLDEVRVLIQAYENTINKDDKGVG
Ga0310130_0000499_27903_28334F015723N/AMAKIISITPKGQWQEFYKLEIRFDNGDFGTAFAKSPTPSYGVGDEVEYSKNEKGTIKIQRPNGFGGGSGGSFATASKSAGDDRSASIIRQVALKAAVEYACAAKHDVPTILENAEAFNRWMLGQSEAPVSHVDHFANRNDSPF
Ga0310130_0000499_29457_29879F033779N/AMTGLMNWKNKRLQRSAMWMILLATLAVVNSCSTAKPILDSVIVRDTLVVTETKYLIDTLEVMKDTTIYQDKVRVQLQYVDRKVVVEAVCEPDTIRITQTKILTKQEPKTNKWTLESYIGMLAFILTFAYLIKRWVDKLTE
Ga0310130_0000499_30737_30910F093771N/AMTKESADSVITSWSLTGAGLLVGYVHQVLGLAVLLASLAYTLWKWRRDWLKEKNNVD
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