Scaffold Ga0310130

Basic Information
Taxon OID	3300034073 Open in IMG/M
Scaffold ID	Ga0310130_0000520 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034073 Open in IMG/M

Scaffold ID

Ga0310130_0000520 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30257
Total Scaffold Genes	54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (64.81%)
Novel Protein Genes	13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (53.85%)
Associated Families	13

Scaffold Components

Scaffold Length (bps)

30257

Total Scaffold Genes

54 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

35 (64.81%)

Novel Protein Genes

13 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (53.85%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001561	Metagenome / Metatranscriptome	670	Y
F002406	Metagenome	562	Y
F007310	Metagenome	353	Y
F008552	Metagenome	331	Y
F009266	Metagenome / Metatranscriptome	320	Y
F009750	Metagenome	313	Y
F010618	Metagenome	301	N
F018927	Metagenome	232	Y
F027179	Metagenome	195	Y
F039635	Metagenome / Metatranscriptome	163	N
F043402	Metagenome	156	Y
F071239	Metagenome / Metatranscriptome	122	N
F101144	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0000520_1410_1607	F043402	GGA	MVEKFEQLVDSLDEREYNNIITLLTLLLESWEDDKINLYTEIQDFELTTIYKVLNLFNEQTEDAS
Ga0310130_0000520_18957_19250	F039635	N/A	MTLEQANKIKSKVEAFNELYAPITLRFQIFSTSENNWAVTITYNYTENEWMTFASLDSRYNQINDKLSGFQFGLEAVEAYQEENGNLKFSHSDVPLG
Ga0310130_0000520_20184_20384	F071239	AGG	LKKIHLSNLRKKYDDKTYQAVKDVISKNSFMASEVNVNKILDIITDPDVKTKFKAWSNGYDFAVIS
Ga0310130_0000520_25028_25582	F008552	N/A	MDQKNLQLFLRYGLNHTYKFFAIIFFLEVTYIKGYNISVMIISFEASANVDTTLFGYFSMEYDPEFFSDIKENLTEISKDNTISFKLDPEDIKLLQGKFENVKRVVSISDIEQNKFTNVFKRKFDSSGFKTFKYVKLHIDKDYFYFTGHHENKDGTKPVEFQSLNFDARFIESLEKKYNESMVN
Ga0310130_0000520_25905_26417	F001561	GAGG	MQTRKQKIEQLNKAIDVLWHGVKDTKDGDYPRIIFLYKEMLKLDPKNRDAWENMIWLMWSLSVNKKDTAWMIEAEKFVKMYLSIMPNGYRAYEYIGMFYRTMVKDERLAMRYYESAIRWKDAPESTHHSLVSLCNKTGDKVRAIGYCKMTLARFPNDPWTKSKLQELTKN
Ga0310130_0000520_26516_26785	F009750	GAG	MKEIITAIYQNGKFKDNKILKPHLTDRIGIRMTFPEGAECILWTNGKKYYAVCEAFGTIFTLNIPRNLGDDIWLKFKTEFEGNYSYNPF
Ga0310130_0000520_29074_29331	F018927	GAGG	MNKHIEITRHLTVDGTTTYYVVEKSKNSSSIIWNGTSKQAAYQVAYRNARKENTPLYDTLYKAEFDRNGVKHIIPIGNELLEVNN
Ga0310130_0000520_29872_30135	F007310	N/A	MRTVLWNNTERWFNHHHYELLIEDITGFDLKQSLCAESVKYMAKRLSNTPYNRTFRSKYSIYQDEYKTLVEKFNYQADNNGKIEVAQ
Ga0310130_0000520_4585_4806	F010618	AGAAG	MSIQELIKKLQEIEAKYPQYSQDTEVVLAIHTENEFSEEVGISYIDEVVHQALDTHSGYICRIVLTGEIYTAE
Ga0310130_0000520_4865_5056	F002406	N/A	MENLKWIRAMADRLRDELSSEYDDDTKDLIIRAFMQGLFQQPEIVEELKSSSLIESDYFEDAE
Ga0310130_0000520_5068_5265	F027179	N/A	MADGLFLYEKENSYVVMDQNDNILKEAITSQTCSSYILKTLQSRRAAERAAIENTNQDKNKNCAI
Ga0310130_0000520_5892_6203	F009266	AGAAG	MTNKERKILDKELQYLCDYQDRIKAIREYTGIHPHKTFLDEVETIEGLYKNVLENRKQCKSTYFSVGTGGWFVVYLRDKKKYKEGEDFSIKIYHTFVWTDNLG
Ga0310130_0000520_6673_7185	F101144	N/A	MEAKTFTYYMTERHGYVETTRAYLRKLKISKLISPYSRQSGNKVYLEEDGDLRLFINRHTVAGIQVTLKEAEKEQRFFDNMWNFKDEYCQDKQFDGFKTDWTMLQRTYFTKPDSIKHIVNSTFETSDGKCLKIVPCFYLDGKPLNESQLKKLGIELTKVRTDECEVSYDD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310130_0000520

Overview

Ecosystem & Geography

Associated Families

Sequences