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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034073 Open in IMG/M |
| Scaffold ID | Ga0310130_0000569 Open in IMG/M |
| Source Dataset Name | Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 27651 |
| Total Scaffold Genes | 46 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 39 (84.78%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Oklahoma | |||||||
| Coordinates | Lat. (o) | 35.784 | Long. (o) | -98.26 | Alt. (m) | Depth (m) | 2896 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001872 | Metagenome / Metatranscriptome | 623 | Y |
| F002421 | Metagenome / Metatranscriptome | 560 | N |
| F003964 | Metagenome | 459 | Y |
| F006139 | Metagenome / Metatranscriptome | 380 | Y |
| F009743 | Metagenome / Metatranscriptome | 313 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310130_0000569_19815_20114 | F009743 | AGGAG | MKIKLQLKRTPHSAPEYYYTNLFVVTEWERLERRNIQQLSTQPLYSDYCCWMHTILKLKGEQVGDNWREWISKNPELEIIPVLDETDPNPTDAAPTAAN |
| Ga0310130_0000569_20226_20738 | F003964 | GGAG | VAEVSARVEVVGLKDALKTLNKIDKSLRREITKDYKRIVQPVIDDANKLVPTGVPLSGMARNWQTKSGFQLLPWIPGMKQKIAAKINTRAIKEYGGNKTNVGTFAIQWKGATGTMFDTSMAGSLGRALTARYGSRSRVMWKAYEQRQNDVMSEMEQLVKRVMEEANRETA |
| Ga0310130_0000569_24063_24227 | F006139 | GGA | MDTEIVVALIGGGFLVLVALIGKIGSDNKKDHGQVHQTLGRIEQKIDHHVENHQ |
| Ga0310130_0000569_24473_24913 | F001872 | AGCAGG | MNEWIKQAIAASNNAVWNNGSWGVRDMRGKTGSLSVHATGRAVDLSYRKSEKRPKANRKGAVSFIDVVVANANTLGVECILDYFPRPYGRAWRCDRQAWKKYSKPTIHGAPGGDWFHIEITPQAADSVIFVKAAFLKVFGEIPPKA |
| Ga0310130_0000569_25912_26310 | F002421 | GGAG | MKTCTICKGTIAYPEITGKTHFVCDGRVPARKLAPFVQGMLASQSSADARWTRNEQNKVDAAIVHVARTKGFFTSDDIWQHLGDQFPVTKGIAGRLNAAARRGIIRNTGELAYAQRGGAHDHAQRLSVWAGI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |