NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0005525

Scaffold Ga0310130_0005525


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0005525 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4937
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023253Metagenome211Y
F038004Metagenome / Metatranscriptome167Y
F079389Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0005525_1329_1514F038004GGTGGMAIKLGADDTHIVLTALWDYRETLTNILVTSPEIDERIKRVDRLIESYKKSFFALDRLGV
Ga0310130_0005525_2103_2321F023253GGAGGMMFWRKEPKTMPHRDVQAEAALGISNAASVLPPKRFMDLVYWAIITNRQISVEDMDALANRLSRAAWERGRK
Ga0310130_0005525_3764_4042F079389N/AMLIAAKEKGWHISLTAAHYGMHRSTISAACERFNIVLPLHPFSAQRVSPRSKVWVDMIDSEKRPKVKLSASPAAIERALRKKAEEKRLQALG
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