NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0021962

Scaffold Ga0310130_0021962


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0021962 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2028
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009135Metagenome / Metatranscriptome322Y
F013524Metagenome / Metatranscriptome270Y
F019476Metagenome / Metatranscriptome229N
F024047Metagenome / Metatranscriptome207N

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0021962_120_308F019476N/AMNNKIKTARIVLDIEWEAADDSDLPSLWDWKRIKMPMDLTKVKYVGIQTPNGPENVSNWMGN
Ga0310130_0021962_1654_1845F009135N/AMNKPKYYLTINLPPNFDEVDADTIKTDLMAYINSKNQYGAMYGPKSHKKGITVEKVIYRTNED
Ga0310130_0021962_1835_2026F013524N/AMKTNKIVIDRLREFTQKNCNTTLDRKLCEDIRYLCDEVERFGREIVKANDHMDEDFITIQRYKN
Ga0310130_0021962_314_502F024047N/AMNIVKKSDIVDWLKNAVEKKMVKELEVPNAKVYLSCDRPNPDVILETKNADGDLQIVRFLIV
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