NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335020_0001386

Scaffold Ga0335020_0001386


Overview

Basic Information
Taxon OID3300034082 Open in IMG/M
Scaffold IDGa0335020_0001386 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17066
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (71.11%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013086Metagenome / Metatranscriptome274Y
F019830Metagenome227Y
F049634Metagenome146Y
F050374Metagenome145N
F066582Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0335020_0001386_12120_12245F049634N/AMIMRKYITNKFNSIFLPYEEGMIEWLNENYPHSKYVVVEVI
Ga0335020_0001386_12242_12439F013086GAGMTERQLIGYIEREEGFYHLHEPPKGSIVTQAFILCKYCNGAIYHCMGPRYDAVCLTCYEKDPDLR
Ga0335020_0001386_13066_13302F019830GGAGMSKRIGPITLDGETADRITLLNLKEYKSYLTKELSAWRKNPRLEDNPEGIWMHPEDVTGNIQAISALDLIIKHFGVEE
Ga0335020_0001386_3222_3398F066582GGAMITSQYQRLEDGPIDSIDAAIFSGDMFHNRENIAAFRAMMARWERGLKECEEIIDGDV
Ga0335020_0001386_3385_3693F050374N/AMEMCEMDYKFIGWNTTDGADKVWGAIYMEDRTIIRPKVLIFWGRRGKKLQTKIDREGWDLDNLIRAKTQKGYNQIDNRHLKTVYPEFQNDLEKTTMWALLKL
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