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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034082 Open in IMG/M |
| Scaffold ID | Ga0335020_0003232 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10888 |
| Total Scaffold Genes | 31 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (80.65%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000311 | Metagenome / Metatranscriptome | 1326 | Y |
| F000714 | Metagenome / Metatranscriptome | 924 | Y |
| F001562 | Metagenome / Metatranscriptome | 670 | Y |
| F002245 | Metagenome / Metatranscriptome | 578 | Y |
| F002598 | Metagenome / Metatranscriptome | 544 | Y |
| F003690 | Metagenome / Metatranscriptome | 473 | Y |
| F005741 | Metagenome / Metatranscriptome | 391 | Y |
| F009143 | Metagenome / Metatranscriptome | 322 | Y |
| F017995 | Metagenome / Metatranscriptome | 237 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335020_0003232_1725_1892 | F009143 | AGGGGG | MMTKWDTIQADVADAYVYIDEEEMYNKAIEEGLEIGSDDFDDDELSKALTLDWND |
| Ga0335020_0003232_2014_2169 | F003690 | GAGG | MTISGFELLISNEYGIEFDSFLGAIYLPWHTILITTALLIAYKIYKRKNNK |
| Ga0335020_0003232_2275_2472 | F001562 | GGGGG | MNKTQFEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPVAFAIGLVEHQDYLVELENE |
| Ga0335020_0003232_2875_3084 | F002598 | AGAAGG | MATKLYTIEGLLIGKTYRSTSRHFEGEIVSAEPRPEIYYGDNTEAYLIGFNYKGSIKTQYATVAVKVGE |
| Ga0335020_0003232_3482_3646 | F017995 | GGA | MSKMKQYIEIIAANCDECGGAGFVFFGDESNYDVSPCDCIADLSDELNVDWVNN |
| Ga0335020_0003232_5546_5770 | F002245 | AGG | MNNLMKVPHTIVFEAIIDLDKIPANLLPALIALDKSSIEKMCQEATLHALAESNVLKTANEFNTWAEVTIVGGN |
| Ga0335020_0003232_7220_7447 | F005741 | AGGA | MKNRFRIEIYDANKANDLTLYSEQGVDREYLNELVFSNLRRFSGRVNAYVFDNQKKKKVTAMFLDESIANKFQTI |
| Ga0335020_0003232_9073_9570 | F000714 | N/A | VETATIQPNNQTKEEKMETTENAIPDTYNPNLLVTYKHIRGYSDAEYVTEKVVNLEWELHNGRESQKRNGLFSSKIDTVKDIITEAYGDSEDQETLRAIAEALDIELTRTIEWSATIEVSGTLELDLLADYDTDVEQMIYDNLQVDSQDGQIEVIDTEVTNVREH |
| Ga0335020_0003232_9570_9782 | F000311 | GAG | MYFELTAPDRLSMEMAYWDAQMIGLDPMALSPLTFNIGTGSIEKVSKIRDKHNLIESYVSDQEPTGYTGR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |