NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335020_0090376

Scaffold Ga0335020_0090376


Overview

Basic Information
Taxon OID3300034082 Open in IMG/M
Scaffold IDGa0335020_0090376 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1568
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008546Metagenome / Metatranscriptome331Y
F024267Metagenome / Metatranscriptome206Y
F028780Metagenome / Metatranscriptome190N

Sequences

Protein IDFamilyRBSSequence
Ga0335020_0090376_1107_1265F024267N/AMKIEITHYGHKASYEFDHEDVTLDDLLYHLDKLLKLTGYTFDGELEIVNEEE
Ga0335020_0090376_1285_1554F008546N/AMIAKVEWWKLLIVFFSAIVLEANSIAGFKFLTHHNWFGMVLMAFINPFLCLPLNHFTIELKNFKQRLLVATAFSIGFVVGILTIRPFFI
Ga0335020_0090376_50_583F028780N/AMKATLDQYISSHYEELYRYTRYFCSKYNPKLTIETVISNAYLHCIEINDNTEDVNKVKSYILNSIKHQVIWKNVDSYKDERIFANEMAVPDTFDDGEDLSYKIAIEQQYQGWKSSVDIYRDGLTDNVKIAVAKAYFDKNLTTARSMAQYFNIPNTSAHYLIAEIKNTLKTIHNEDKK
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