NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326724_0016117

Scaffold Ga0326724_0016117


Overview

Basic Information
Taxon OID3300034091 Open in IMG/M
Scaffold IDGa0326724_0016117 Open in IMG/M
Source Dataset NamePeat soil microbial communities from McLean, Ithaca, NY, United States - MB00N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6953
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027443Metagenome / Metatranscriptome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0326724_0016117_180_818F027443GAGGLEKLDPYGDWVLLPASEKESKNPPVSDEELIFAAREVWPRVLGYAKKELSANGLGSDSASMAAQVWERMLRSVSRTRQRYTDHRQPIADLQSYLYLAFVHRFNRAVQQEQKHAERIELVSSSVDLERIESAQDAGWVEELERTIAIRQITDRMDPWTKKVWRARQLGYSWKEISLRLGSTEDQARKKFTYGVEKTRQTIVRLLKPGRPKSPG
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