NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326724_0063700

Scaffold Ga0326724_0063700


Overview

Basic Information
Taxon OID3300034091 Open in IMG/M
Scaffold IDGa0326724_0063700 Open in IMG/M
Source Dataset NamePeat soil microbial communities from McLean, Ithaca, NY, United States - MB00N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2582
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025427Metagenome / Metatranscriptome201Y
F028392Metagenome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0326724_0063700_2140_2385F025427N/AMEELLASLGTCPIQKKGLFWRLFKLYWKKLLFIALMLVLPGGLIVLFLCITAWALNWGHEMTAYMDETYKKWKEEHDVHSE
Ga0326724_0063700_555_977F028392AGGAMEDLHMPNTIAVVHLPDALGNGNSALVKLAGKVDSFSLVLWRTPECQLKRQIEKEYHAMVFTTRKEVRKYCPKYRHFAGEGILDFSTDCASGQLEPGDLGKPPQPKRGRLCHQCCFFLGEPEEQVPAESISRTPGGLPVA
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